I had a similar problem once.  With the truck key on, but the engine off, everything seemed to operate fine.  As soon as the engine was started the valve would not operate.  I was using a MC050-010 controller with a PVG32 valve.  And to top it off I had several trucks before this one that would operate without any problems.  What I found is that pins that I had used to power the PVG32 valve could not handle the inrush current when the truck was running.  With the engine off, the voltage was around 24-25 volts, but with the truck running the voltage was 27-28 volts.  The extra current with the engine running was enough to cause the output pin to shut itself down.  You may be experiencing something similar.